[NexVigilant Science Station] Genomics & Expression Mining
Gene expression mining via NCBI GEO, variant searching, pathway enrichment, and protein interaction networks. Public API-powered genomics intelligence. Built by NexVigilant (https://nexvigilant.com). DISCLAIMER: This WebMCP configuration was developed by NexVigilant, LLC and is provided as a community resource to assist AI agents in navigating pharmacovigilance and drug research tools. NexVigilant is not responsible for, and does not officially endorse third-party use of this configuration, and expressly disclaims any and all liability for damages of any kind arising out of the use, reference to, or reliance upon any information or actions performed through this resource. No guarantee is provided that the content is correct, accurate, complete, up-to-date, or that the underlying site structure has not changed. This tool is for educational and professional development purposes only and does not constitute medical or regulatory advice. Built by NexVigilant (https://nexvigilant.com) — Empowerment Through Vigilance.
Tools (6)5 verified
search-geo-datasetsextractverified
by MatthewCampCorp
[NexVigilant Science Station] Search NCBI GEO for gene expression datasets by gene, treatment, disease, or tissue
Input Schema
{
"type": "object",
"properties": {}
}Annotations
{
"readOnlyHint": "true",
"idempotentHint": "true",
"destructiveHint": "false"
}Execution Metadata
Selector: body
Auto-submit: false
Result selector: body
Result extract: text
get-expression-profileextractverified
by MatthewCampCorp
[NexVigilant Science Station] Get tissue expression profile for a gene by mining GEO profiling datasets
Input Schema
{
"type": "object",
"properties": {}
}Annotations
{
"readOnlyHint": "true",
"idempotentHint": "true",
"destructiveHint": "false"
}Execution Metadata
Selector: body
Auto-submit: false
Result selector: body
Result extract: text
search-variantsextract
by MatthewCampCorp
[NexVigilant Science Station] Search literature for clinically relevant gene variants — pathogenic mutations, pharmacogenomic variants
Input Schema
{
"type": "object",
"properties": {}
}Annotations
{
"readOnlyHint": "true",
"idempotentHint": "true",
"destructiveHint": "false"
}Execution Metadata
Selector: body
Auto-submit: false
Result selector: body
Result extract: text
get-pathway-enrichmentextractverified
by MatthewCampCorp
[NexVigilant Science Station] Find KEGG/Reactome pathway associations for a gene or gene list via literature mining
Input Schema
{
"type": "object",
"properties": {}
}Annotations
{
"readOnlyHint": "true",
"idempotentHint": "true",
"destructiveHint": "false"
}Execution Metadata
Selector: body
Auto-submit: false
Result selector: body
Result extract: text
search-protein-interactionsextractverified
by MatthewCampCorp
[NexVigilant Science Station] Find protein-protein interaction partners from STRING/BioGRID literature
Input Schema
{
"type": "object",
"properties": {}
}Annotations
{
"readOnlyHint": "true",
"idempotentHint": "true",
"destructiveHint": "false"
}Execution Metadata
Selector: body
Auto-submit: false
Result selector: body
Result extract: text
search-literatureextractverified
by MatthewCampCorp
[NexVigilant Science Station] General PubMed literature search across biomedical topics
Input Schema
{
"type": "object",
"properties": {}
}Annotations
{
"readOnlyHint": "true",
"idempotentHint": "true",
"destructiveHint": "false"
}Execution Metadata
Selector: body
Auto-submit: false
Result selector: body
Result extract: text
Config ID: 786ed95a-63d3-462f-9c53-d457c9c36325
Created: 3/6/2026
Updated: 3/8/2026